Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
TMCC3Transmembrane and coiled-coil domain family 3. (486 aa)    
Predicted Functional Partners:
atp2b2
Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium.
      
 0.656
atp2b3
Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium.
      
 0.656
erc2
ELKS/RAB6-interacting/CAST family member 2.
      
 0.656
ERC2
Uncharacterized protein.
      
 0.656
TMCC1
Transmembrane and coiled-coil domain family 1.
  
 
0.621
LOC101163807
Transmembrane and coiled-coil domain family 1b.
   
 
 0.570
tmcc2
Transmembrane and coiled-coil domain family 2.
   
 
 0.570
LOC101168539
Prickle homolog 2a.
      
 0.511
prickle2
Prickle homolog 2b.
      
 0.510
PRICKLE1
Prickle homolog 1a.
      
 0.508
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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