STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sspoSubcommissural organ spondin. (4429 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30.
   
  0.758
gle1
Uncharacterized protein.
   
 0.655
LOC101168993
LRRCT domain-containing protein.
    
 0.653
nup214
Nup214_FG domain-containing protein.
   
 0.641
aaas
Achalasia, adrenocortical insufficiency, alacrimia.
    
 0.635
nup50
Nucleoporin 50.
     
 0.629
rae1
Ribonucleic acid export 1.
    
 0.605
homez
Homeobox and leucine zipper encoding a.
    
 0.604
LOC101162931
Cardiomyopathy associated 5.
    
 0.603
H2LA82_ORYLA
Nucleoporin 88.
     
 0.595
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.