STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sspoSubcommissural organ spondin. (4429 aa)    
Predicted Functional Partners:
adamts13
ADAM metallopeptidase with thrombospondin type 1 motif, 13.
    
 0.809
nup214
Nup214_FG domain-containing protein.
    
 0.750
gp1bb
Glycoprotein Ib platelet subunit beta.
    
 0.738
nup98
Nucleoporin 98.
    
 0.737
LOC101174928
Coagulation factor VIII, procoagulant component; Belongs to the multicopper oxidase family.
    
 0.730
LOC101166425
Coagulation factor V; Belongs to the multicopper oxidase family.
    
 0.730
nup43
Nucleoporin 43.
    
 0.718
H2LA82_ORYLA
Nucleoporin 88.
    
 0.701
LOC101172732
Glycoprotein IX (platelet).
   
 0.687
nup93
Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.
    
 0.685
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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