STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101165159Netrin G2. (530 aa)    
Predicted Functional Partners:
lrrc4
Leucine rich repeat containing 4.2.
    
 0.943
LOC101168588
Leucine rich repeat containing 4.1.
    
 0.943
LOC101161737
Si:ch211-57n23.4.
    
 0.593
ENSORLP00000026301
Ig-like domain-containing protein.
    
 0.593
ENSORLP00000027091
Uncharacterized protein.
    
 0.593
dcc
DCC netrin 1 receptor.
    
 0.593
igdcc4
Immunoglobulin superfamily, DCC subclass, member 4.
    
 0.593
igdcc3
Immunoglobulin superfamily, DCC subclass, member 3.
    
 0.593
neo1
Neogenin 1b.
    
 0.593
fndc1
Fibronectin type III domain containing 1.
    
 0.581
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.