Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cnih4Cornichon family AMPA receptor auxiliary protein 4. (139 aa)    
Predicted Functional Partners:
tmed10
Transmembrane p24 trafficking protein 10.
   
 0.913
LOC101161906
Transmembrane p24 trafficking protein 2.
   
 0.855
gria2
Uncharacterized protein.
    
 0.854
LOC100529189
SEC24 homolog B, COPII coat complex component.
    
 0.786
sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
   
 0.786
sec24a
SEC24 homolog A, COPII coat complex component.
    
 0.786
sec24d
Uncharacterized protein.
     
 0.770
CNIH2
Cornichon family AMPA receptor auxiliary protein 2.
     
 0.769
LOC101155158
Cornichon family AMPA receptor auxiliary protein 3.
     
 0.769
gorasp1
Golgi reassembly stacking protein 1a.
   
 0.763
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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