STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LGU8_ORYLACCHC-type domain-containing protein. (833 aa)    
Predicted Functional Partners:
relch
RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing.
    
 
 0.616
mtrex
Uncharacterized protein.
   
 
 0.568
LOC101171232
Uncharacterized protein.
  
 
 
 0.493
DNAJC13
DnaJ heat shock protein family (Hsp40) member C13.
   
  
 0.447
tent4b
Terminal nucleotidyltransferase 4B.
   
 
 0.421
LOC101163355
Uncharacterized protein.
   
 
 0.421
tent4a
Terminal nucleotidyltransferase 4A.
   
 
 0.421
tmem150b
Zgc:123244.
      
 0.400
nkapd1
Zgc:162339.
      
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.