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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164311Si:ch73-141c7.1. (235 aa)    
Predicted Functional Partners:
sdhaf4
Succinate dehydrogenase complex assembly factor 4.
      
 0.644
arf1
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
      
 0.615
coq3
Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.
  
  
 0.615
LOC101166537
Cytochrome c oxidase assembly factor COX18.
      
 0.601
LOC101175404
SCO cytochrome c oxidase assembly protein 1.
   
  
 0.596
LOC101174857
Cytochrome c oxidase subunit 5B2.
    
 
 0.567
LOC101162280
Ubiquinol-cytochrome c reductase complex assembly factor 1.
      
 0.562
ndufaf3
NADH:ubiquinone oxidoreductase complex assembly factor.
      
 0.553
LOC101163991
Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
 
 0.543
LOC101170179
Uncharacterized protein.
      
 0.535
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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