Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101164311Si:ch73-141c7.1. (235 aa)    
Predicted Functional Partners:
LOC101175404
SCO cytochrome c oxidase assembly protein 1.
   
 
 0.805
sdhaf4
Succinate dehydrogenase complex assembly factor 4.
      
 0.717
LOC101166537
Cytochrome c oxidase assembly factor COX18.
      
 0.658
LOC101170179
Uncharacterized protein.
     
 0.658
LOC101172078
Cytochrome c oxidase subunit 4I2.
     
 0.644
LOC101171816
Cytochrome c oxidase subunit 4I1.
     
 0.643
LOC101170993
Uncharacterized protein.
     
 0.628
arf1
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
      
 0.624
LOC101165997
Cytochrome c oxidase assembly homolog 15 (yeast).
    
 0.618
LOC101159951
Cytochrome c oxidase assembly homolog 11 (yeast).
   
 
 0.610
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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