Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rrp8Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (569 aa)    
Predicted Functional Partners:
cebpz
CCAAT enhancer binding protein zeta.
   
   0.965
rbm28
RNA binding motif protein 28.
   
 
 0.963
sirt1
Deacetylase sirtuin-type domain-containing protein.
    
 0.961
rpf2
Ribosome production factor 2 homolog.
   
   0.961
pum3
Pumilio RNA-binding family member 3.
   
 
 0.960
bysl
Bystin-like.
   
 
 0.958
ftsj3
pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
   
 
 0.954
brix1
Brix domain containing 2.
   
 
 0.953
rbm34
RNA binding motif protein 34.
   
   0.947
ebna1bp2
EBNA1 binding protein 2.
   
   0.946
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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