STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rrp8Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (569 aa)    
Predicted Functional Partners:
rpf2
Ribosome production factor 2 homolog.
   
   0.926
pum3
Pumilio RNA-binding family member 3.
   
 
 0.905
kpnb1
Karyopherin (importin) beta 1.
    
   0.904
rbm28
RNA binding motif protein 28.
   
   0.903
bysl
Bystin-like.
   
 
 0.896
brix1
Brix domain containing 2.
   
   0.883
nob1
NIN1 (RPN12) binding protein 1 homolog.
   
  
 0.869
ebna1bp2
EBNA1 binding protein 2.
   
   0.867
sirt1
Deacetylase sirtuin-type domain-containing protein.
    
 0.861
noc2l
NOC2-like nucleolar associated transcriptional repressor.
   
 
 0.859
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.