Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
c7Complement component 7a. (779 aa)    
Predicted Functional Partners:
c6
Complement component 6.
  
 
0.999
c9
Complement component 9.
   
0.998
c5
Uncharacterized protein.
   
 0.996
C8A
Complement C8 alpha chain.
   
0.985
c8g
Complement component 8, gamma polypeptide; Belongs to the calycin superfamily. Lipocalin family.
   
 0.963
c8b
Complement component 8, beta polypeptide.
   
 
0.929
LOC101174608
Complement component 7b.
  
  
 
0.903
cfi
Complement factor I; Belongs to the peptidase S1 family.
   
  
 0.778
LOC101157076
Vitronectin b.
   
 
 0.624
LOC101170202
Vitronectin a.
   
 
 0.624
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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