STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ascc3Activating signal cointegrator 1 complex subunit 3. (2059 aa)    
Predicted Functional Partners:
ascc2
Activating signal cointegrator 1 complex subunit 2.
    
 0.977
prpf8
Pre-mRNA processing factor 8.
   
 0.973
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.956
trip4
Thyroid hormone receptor interactor 4.
    
 
 0.943
ascc1
Activating signal cointegrator 1 complex subunit 1.
    
 0.937
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.932
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.927
snrpg
Small nuclear ribonucleoprotein G.
   
  0.918
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.915
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 0.900
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.