Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ascc3Activating signal cointegrator 1 complex subunit 3. (2059 aa)    
Predicted Functional Partners:
trip4
Thyroid hormone receptor interactor 4.
   
 0.999
ascc2
Activating signal cointegrator 1 complex subunit 2.
    
 0.999
ascc1
Activating signal cointegrator 1 complex subunit 1.
    
 0.995
znf598
Zinc finger protein 598.
    
 0.959
prpf8
Pre-mRNA processing factor 8.
   
 0.907
rnf113a
Uncharacterized protein.
   
 
 0.846
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.839
snrnp40
Small nuclear ribonucleoprotein 40 (U5).
   
 0.834
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.829
rps27a
Ribosomal protein S27a.
    
 0.823
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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