Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ccdc43Coiled-coil domain containing 43. (215 aa)    
Predicted Functional Partners:
pnkp
Polynucleotide kinase 3'-phosphatase.
    
   0.879
CLRN3
Clarin 3.
    
   0.707
washc3
WASH complex subunit 3.
      
 0.639
rec114
Uncharacterized protein.
    
   0.613
washc5
WASH complex subunit 5.
      
 0.604
gosr2
Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
      
 0.602
eftud2
Elongation factor Tu GTP binding domain containing 2.
      
 0.542
ccdc137
Uncharacterized protein.
      
 0.535
gopc
Golgi-associated PDZ and coiled-coil motif containing.
   
   0.515
foxk1
Uncharacterized protein.
      
 0.475
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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