STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110015465Complement component 1, q subcomponent-like 3b. (262 aa)    
Predicted Functional Partners:
pcdh9
Protocadherin 9.
     
 0.629
npas4
Neuronal PAS domain protein 4a.
   
  
 0.617
fosl2
Fos-like antigen 2.
    
 0.604
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.572
msh3
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
      
 0.562
sh3tc1
SH3 domain-containing protein.
      
 0.532
gria2
Uncharacterized protein.
     
 0.499
fam135a
Family with sequence similarity 135 member A.
      
 0.498
H2MFT6_ORYLA
Uncharacterized protein.
    
   0.488
Lrrc74a
Leucine rich repeat containing 74A.
    
 
 0.474
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.