STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101171352Dachsous cadherin-related 1b. (3281 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.656
fjx1
Four-jointed box kinase 1.
   
 
 0.629
FAT4
FAT atypical cadherin 4.
   
 
 0.623
ENSORLP00000031779
Uncharacterized protein.
   
 
 0.623
LOC101171502
Uncharacterized protein.
    
 0.591
LOC101173369
Junction plakoglobin a.
    
 0.591
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
      
 0.571
LOC101157155
Cytochrome P450, family 21, subfamily A, polypeptide 2; Belongs to the cytochrome P450 family.
      
 0.552
ctnna1
Catenin (cadherin-associated protein), alpha 1.
   
 0.538
ctnna2
Catenin (cadherin-associated protein), alpha 2.
   
 0.538
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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