STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phyhd1Phytanoyl-CoA dioxygenase domain containing 1. (292 aa)    
Predicted Functional Partners:
nup188
Nucleoporin 188.
 
      0.755
pex7
Peroxisomal biogenesis factor 7.
    
 0.739
gale
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
    
 0.630
aasdh
Aminoadipate-semialdehyde dehydrogenase.
  
  
 0.614
pex12
Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
     
 0.586
plpp2
Phospholipid phosphatase 2a.
      
 0.585
LOC101156966
Phospholipid phosphatase 2b.
      
 0.585
yrdc
YrdC N(6)-threonylcarbamoyltransferase domain containing.
     
 0.528
LOC101163339
Si:ch211-153b23.4.
     
 0.523
pex10
Peroxisomal biogenesis factor 10.
   
 
 0.509
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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