STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101165880BTB domain-containing protein; Belongs to the potassium channel family. (622 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30.
   
  0.817
LOC101165388
Solute carrier family 12 member 5a.
      
 0.814
LOC101170562
Uncharacterized protein.
      
 0.658
KCNIP3
Potassium voltage-gated channel interacting protein 3.
    
 0.650
KCNIP4
Potassium voltage-gated channel interacting protein 4.
    
 0.650
LOC101166068
Kv channel interacting protein 3b, calsenilin.
    
 0.650
LOC101158830
Kv channel interacting protein 2.
    
 0.650
KCNIP2
Potassium voltage-gated channel interacting protein 2.
    
 0.650
kcnip1
Uncharacterized protein.
    
 0.650
LOC101158298
Kv channel interacting protein 1 b.
    
 0.650
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.