LOC101156724 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101156724

WD repeat, sterile alpha motif and U-box domain containing 1. (474 aa)

Predicted Functional Partners:

leo1

0.893

ttc37

0.759

cdc73

0.734

skiv2l

0.725

ubox5

0.702

paf1

0.691

ctr9

0.621

cinp

0.621

ddx20

0.617

hbs1l

0.608

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101156724	cdc73	ENSORLP00000005361	ENSORLP00000034636	WD repeat, sterile alpha motif and U-box domain containing 1.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.734
LOC101156724	cinp	ENSORLP00000005361	ENSORLP00000023142	WD repeat, sterile alpha motif and U-box domain containing 1.	Cyclin-dependent kinase 2 interacting protein.	0.621
LOC101156724	ctr9	ENSORLP00000005361	ENSORLP00000009105	WD repeat, sterile alpha motif and U-box domain containing 1.	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.621
LOC101156724	ddx20	ENSORLP00000005361	ENSORLP00000011224	WD repeat, sterile alpha motif and U-box domain containing 1.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	0.617
LOC101156724	hbs1l	ENSORLP00000005361	ENSORLP00000020730	WD repeat, sterile alpha motif and U-box domain containing 1.	HBS1-like translational GTPase.	0.608
LOC101156724	leo1	ENSORLP00000005361	ENSORLP00000003825	WD repeat, sterile alpha motif and U-box domain containing 1.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.893
LOC101156724	paf1	ENSORLP00000005361	ENSORLP00000025907	WD repeat, sterile alpha motif and U-box domain containing 1.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.691
LOC101156724	skiv2l	ENSORLP00000005361	ENSORLP00000002525	WD repeat, sterile alpha motif and U-box domain containing 1.	SKI2 homolog, superkiller viralicidic activity 2-like.	0.725
LOC101156724	ttc37	ENSORLP00000005361	ENSORLP00000012935	WD repeat, sterile alpha motif and U-box domain containing 1.	Tetratricopeptide repeat domain 37.	0.759
LOC101156724	ubox5	ENSORLP00000005361	ENSORLP00000027069	WD repeat, sterile alpha motif and U-box domain containing 1.	U-box domain containing 5.	0.702
cdc73	LOC101156724	ENSORLP00000034636	ENSORLP00000005361	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	WD repeat, sterile alpha motif and U-box domain containing 1.	0.734
cdc73	cinp	ENSORLP00000034636	ENSORLP00000023142	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	Cyclin-dependent kinase 2 interacting protein.	0.933
cdc73	ctr9	ENSORLP00000034636	ENSORLP00000009105	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.999
cdc73	leo1	ENSORLP00000034636	ENSORLP00000003825	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.999
cdc73	paf1	ENSORLP00000034636	ENSORLP00000025907	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.999
cinp	LOC101156724	ENSORLP00000023142	ENSORLP00000005361	Cyclin-dependent kinase 2 interacting protein.	WD repeat, sterile alpha motif and U-box domain containing 1.	0.621
cinp	cdc73	ENSORLP00000023142	ENSORLP00000034636	Cyclin-dependent kinase 2 interacting protein.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.933
cinp	leo1	ENSORLP00000023142	ENSORLP00000003825	Cyclin-dependent kinase 2 interacting protein.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.995
cinp	paf1	ENSORLP00000023142	ENSORLP00000025907	Cyclin-dependent kinase 2 interacting protein.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.941
ctr9	LOC101156724	ENSORLP00000009105	ENSORLP00000005361	CTR9 homolog, Paf1/RNA polymerase II complex component.	WD repeat, sterile alpha motif and U-box domain containing 1.	0.621