Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC101156479Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a. (1488 aa)    
Predicted Functional Partners:
LOC101171716
Serine/threonine-protein phosphatase.
    
 0.552
PPP6C
Serine/threonine-protein phosphatase.
    
 0.552
ppp6r2
Protein phosphatase 6, regulatory subunit 2a.
    
 0.455
ppp6r3
Protein phosphatase 6, regulatory subunit 3.
    
 0.455
LOC101175152
Protein phosphatase 6, regulatory subunit 2b.
    
 0.455
ift81
Intraflagellar transport 81 homolog.
    
 0.429
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
    
 0.427
traf7
TNF receptor-associated factor 7.
    
 0.405
REL
REL proto-oncogene, NF-kB subunit.
   
 0.401
relb
V-rel avian reticuloendotheliosis viral oncogene homolog B.
   
 0.401
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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