STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101172759Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (327 aa)    
Predicted Functional Partners:
LOC101175224
Si:dkey-43k4.5; Belongs to the potassium channel family.
      
 0.645
prep
Prolyl endopeptidase.
   
  
 0.596
impad1
Inositol monophosphatase domain containing 1.
 
 
    0.555
pot1
Protection of telomeres 1 homolog.
    
 0.513
ENSORLP00000035938
Uncharacterized protein.
    
 0.486
gpnmb
Glycoprotein (transmembrane) nmb.
      
 0.467
zdhhc1
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
     
0.425
LOC110016654
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
     
0.425
aoc1
Amine oxidase.
      
 0.400
GOLGA7
Golgin A7.
    
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.