STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF126Ring finger protein 126. (474 aa)    
Predicted Functional Partners:
xkr4
XK-related protein.
     
  0.900
LOC101168926
XK-related protein.
     
  0.900
xkr9
XK-related protein.
     
  0.900
LOC101167883
XK-related protein.
     
  0.900
LOC101162767
XK-related protein.
     
  0.900
LOC101154866
XK-related protein.
     
  0.900
LOC101160072
XK-related protein.
     
  0.900
LOC101169752
XK-related protein.
     
  0.900
ubxn7
UBX domain protein 7.
   
   0.602
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.497
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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