STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
etf1Eukaryotic translation termination factor 1b. (443 aa)    
Predicted Functional Partners:
gspt1
G1 to S phase transition 1.
   
 0.996
LOC101175535
G1 to S phase transition 1, like.
   
 0.996
jmjd4
Jumonji domain containing 4.
    
 0.991
abce1
ATP-binding cassette, sub-family E (OABP), member 1.
   
 
 0.991
UPF1
UPF1 RNA helicase and ATPase.
   
 0.973
H2MY57_ORYLA
FATC domain-containing protein.
    
 
 0.949
Smg1
SMG1_N domain-containing protein.
    
 
 0.949
rps23
Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
  
 0.937
fau
40S ribosomal protein S30.
   
 0.932
rpl12
Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.
  
  0.932
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (34%) [HD]