erp27 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

erp27

Uncharacterized protein. (254 aa)

Predicted Functional Partners:

LOC101168622

0.893

eef1g

0.807

LOC101158844

0.777

LOC101162958

0.777

cars1

0.761

crebrf

0.753

hspa5

0.744

foxred2

0.737

eef1b2

0.724

mgp

0.714

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101158844	cars1	ENSORLP00000015598	ENSORLP00000032168	Eukaryotic translation elongation factor 1 delta b (guanine nucleotide exchange protein); Belongs to the EF-1-beta/EF-1-delta family.	Cysteinyl-tRNA synthetase.	0.894
LOC101158844	eef1b2	ENSORLP00000015598	ENSORLP00000023179	Eukaryotic translation elongation factor 1 delta b (guanine nucleotide exchange protein); Belongs to the EF-1-beta/EF-1-delta family.	Eukaryotic translation elongation factor 1 beta 2; Belongs to the EF-1-beta/EF-1-delta family.	0.993
LOC101158844	eef1g	ENSORLP00000015598	ENSORLP00000003899	Eukaryotic translation elongation factor 1 delta b (guanine nucleotide exchange protein); Belongs to the EF-1-beta/EF-1-delta family.	Eukaryotic translation elongation factor 1 gamma.	0.999
LOC101158844	erp27	ENSORLP00000015598	ENSORLP00000005399	Eukaryotic translation elongation factor 1 delta b (guanine nucleotide exchange protein); Belongs to the EF-1-beta/EF-1-delta family.	Uncharacterized protein.	0.777
LOC101162958	cars1	ENSORLP00000029879	ENSORLP00000032168	Eukaryotic translation elongation factor 1 delta a (guanine nucleotide exchange protein); Belongs to the EF-1-beta/EF-1-delta family.	Cysteinyl-tRNA synthetase.	0.894
LOC101162958	eef1b2	ENSORLP00000029879	ENSORLP00000023179	Eukaryotic translation elongation factor 1 delta a (guanine nucleotide exchange protein); Belongs to the EF-1-beta/EF-1-delta family.	Eukaryotic translation elongation factor 1 beta 2; Belongs to the EF-1-beta/EF-1-delta family.	0.993
LOC101162958	eef1g	ENSORLP00000029879	ENSORLP00000003899	Eukaryotic translation elongation factor 1 delta a (guanine nucleotide exchange protein); Belongs to the EF-1-beta/EF-1-delta family.	Eukaryotic translation elongation factor 1 gamma.	0.999
LOC101162958	erp27	ENSORLP00000029879	ENSORLP00000005399	Eukaryotic translation elongation factor 1 delta a (guanine nucleotide exchange protein); Belongs to the EF-1-beta/EF-1-delta family.	Uncharacterized protein.	0.777
LOC101168622	erp27	ENSORLP00000009411	ENSORLP00000005399	Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog a.	Uncharacterized protein.	0.893
LOC101168622	mgp	ENSORLP00000009411	ENSORLP00000039077	Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog a.	Gla domain-containing protein.	0.707
cars1	LOC101158844	ENSORLP00000032168	ENSORLP00000015598	Cysteinyl-tRNA synthetase.	Eukaryotic translation elongation factor 1 delta b (guanine nucleotide exchange protein); Belongs to the EF-1-beta/EF-1-delta family.	0.894
cars1	LOC101162958	ENSORLP00000032168	ENSORLP00000029879	Cysteinyl-tRNA synthetase.	Eukaryotic translation elongation factor 1 delta a (guanine nucleotide exchange protein); Belongs to the EF-1-beta/EF-1-delta family.	0.894
cars1	eef1b2	ENSORLP00000032168	ENSORLP00000023179	Cysteinyl-tRNA synthetase.	Eukaryotic translation elongation factor 1 beta 2; Belongs to the EF-1-beta/EF-1-delta family.	0.499
cars1	eef1g	ENSORLP00000032168	ENSORLP00000003899	Cysteinyl-tRNA synthetase.	Eukaryotic translation elongation factor 1 gamma.	0.978
cars1	erp27	ENSORLP00000032168	ENSORLP00000005399	Cysteinyl-tRNA synthetase.	Uncharacterized protein.	0.761
crebrf	eef1g	ENSORLP00000002966	ENSORLP00000003899	Creb3 regulatory factor.	Eukaryotic translation elongation factor 1 gamma.	0.420
crebrf	erp27	ENSORLP00000002966	ENSORLP00000005399	Creb3 regulatory factor.	Uncharacterized protein.	0.753
eef1b2	LOC101158844	ENSORLP00000023179	ENSORLP00000015598	Eukaryotic translation elongation factor 1 beta 2; Belongs to the EF-1-beta/EF-1-delta family.	Eukaryotic translation elongation factor 1 delta b (guanine nucleotide exchange protein); Belongs to the EF-1-beta/EF-1-delta family.	0.993
eef1b2	LOC101162958	ENSORLP00000023179	ENSORLP00000029879	Eukaryotic translation elongation factor 1 beta 2; Belongs to the EF-1-beta/EF-1-delta family.	Eukaryotic translation elongation factor 1 delta a (guanine nucleotide exchange protein); Belongs to the EF-1-beta/EF-1-delta family.	0.993
eef1b2	cars1	ENSORLP00000023179	ENSORLP00000032168	Eukaryotic translation elongation factor 1 beta 2; Belongs to the EF-1-beta/EF-1-delta family.	Cysteinyl-tRNA synthetase.	0.499