Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164457Solute carrier family 34 member 2a. (684 aa)    
Predicted Functional Partners:
pdzk1
PDZ domain containing 1.
   
 
 0.570
H2MJP6_ORYLA
Uncharacterized protein.
   
 
 0.548
oxsm
3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 0.527
dhx33
DEAH (Asp-Glu-Ala-His) box polypeptide 33.
   
  0.521
pdcd2l
Programmed cell death 2-like.
   
 
 0.515
pdcd2
Programmed cell death 2.
   
 
 0.515
LOC101167425
Wolfram syndrome 1a (wolframin).
      
 0.488
wfs1
Wolfram syndrome 1b (wolframin).
      
 0.488
elf2
E74-like factor 2b (ets domain transcription factor).
      
 0.483
slc3a1
Solute carrier family 3 member 1.
   
 
 0.477
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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