Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PNPT1Polyribonucleotide nucleotidyltransferase 1. (796 aa)    
Predicted Functional Partners:
supv3l1
SUV3-like helicase.
   
 0.989
pmpca
Peptidase (mitochondrial processing) alpha; Belongs to the peptidase M16 family.
  
 
 0.895
chek2
Checkpoint kinase 2.
      
 0.887
aldh1a2
Retinaldehyde dehydrogenase type2; Belongs to the aldehyde dehydrogenase family.
  
  
 0.864
LOC101160053
G-rich RNA sequence binding factor 1.
    
 
 0.808
LOC101157209
Ubiquinol-cytochrome c reductase core protein 1.
  
 
 0.780
pmpcb
Peptidase (mitochondrial processing) beta; Belongs to the peptidase M16 family.
  
 
 0.780
exosc10
Exosome component 10.
   
 
 0.771
alg9
Ferredoxin-fold anticodon binding domain containing 1.
  
  
 0.754
tsfm
Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
  
 
 0.743
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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