tut1 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

tut1

Terminal uridylyl transferase 1, U6 snRNA-specific. (794 aa)

Predicted Functional Partners:

sart3

0.966

prpf31

0.962

prpf4

0.962

lsm6

0.962

ccdc84

0.954

prpf3

0.935

papolg

0.928

larp7

0.924

cpsf3

0.922

lsm3

0.914

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ccdc84	prpf3	ENSORLP00000001970	ENSORLP00000012942	Coiled-coil domain containing 84.	PRP3 pre-mRNA processing factor 3 homolog (yeast).	0.942
ccdc84	prpf31	ENSORLP00000001970	ENSORLP00000028622	Coiled-coil domain containing 84.	PRP31 pre-mRNA processing factor 31 homolog (yeast).	0.650
ccdc84	sart3	ENSORLP00000001970	ENSORLP00000026202	Coiled-coil domain containing 84.	Spliceosome associated factor 3, U4/U6 recycling protein.	0.621
ccdc84	tut1	ENSORLP00000001970	ENSORLP00000005439	Coiled-coil domain containing 84.	Terminal uridylyl transferase 1, U6 snRNA-specific.	0.954
cpsf3	papolg	ENSORLP00000023537	ENSORLP00000001961	Cleavage and polyadenylation specific factor 3.	Poly(A) polymerase gamma.	0.989
cpsf3	tut1	ENSORLP00000023537	ENSORLP00000005439	Cleavage and polyadenylation specific factor 3.	Terminal uridylyl transferase 1, U6 snRNA-specific.	0.922
larp7	lsm3	ENSORLP00000006276	ENSORLP00000042855	La ribonucleoprotein domain family, member 7.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.694
larp7	prpf3	ENSORLP00000006276	ENSORLP00000012942	La ribonucleoprotein domain family, member 7.	PRP3 pre-mRNA processing factor 3 homolog (yeast).	0.688
larp7	sart3	ENSORLP00000006276	ENSORLP00000026202	La ribonucleoprotein domain family, member 7.	Spliceosome associated factor 3, U4/U6 recycling protein.	0.962
larp7	tut1	ENSORLP00000006276	ENSORLP00000005439	La ribonucleoprotein domain family, member 7.	Terminal uridylyl transferase 1, U6 snRNA-specific.	0.924
lsm3	larp7	ENSORLP00000042855	ENSORLP00000006276	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	La ribonucleoprotein domain family, member 7.	0.694
lsm3	lsm6	ENSORLP00000042855	ENSORLP00000038911	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
lsm3	prpf3	ENSORLP00000042855	ENSORLP00000012942	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	PRP3 pre-mRNA processing factor 3 homolog (yeast).	0.997
lsm3	prpf31	ENSORLP00000042855	ENSORLP00000028622	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	PRP31 pre-mRNA processing factor 31 homolog (yeast).	0.978
lsm3	prpf4	ENSORLP00000042855	ENSORLP00000036352	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	PRP4 pre-mRNA processing factor 4 homolog (yeast).	0.980
lsm3	sart3	ENSORLP00000042855	ENSORLP00000026202	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Spliceosome associated factor 3, U4/U6 recycling protein.	0.959
lsm3	tut1	ENSORLP00000042855	ENSORLP00000005439	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Terminal uridylyl transferase 1, U6 snRNA-specific.	0.914
lsm6	lsm3	ENSORLP00000038911	ENSORLP00000042855	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
lsm6	prpf3	ENSORLP00000038911	ENSORLP00000012942	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	PRP3 pre-mRNA processing factor 3 homolog (yeast).	0.996
lsm6	prpf31	ENSORLP00000038911	ENSORLP00000028622	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	PRP31 pre-mRNA processing factor 31 homolog (yeast).	0.988