STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gpalpp1GPALPP motifs containing 1. (345 aa)    
Predicted Functional Partners:
wdr6
WD repeat domain 6.
      
 0.558
tbl2
Transducin (beta)-like 2.
      
 0.491
LOC101161577
Phosphatidylserine synthase 1a.
      
 0.456
PTDSS1
Phosphatidylserine synthase 1.
      
 0.456
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
      
 0.447
lrrc39
Leucine rich repeat containing 39.
   
  
 0.404
ENSORLP00000044935
Uncharacterized protein.
   
  
 0.404
tmco1
Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling.
      
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.