Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gpalpp1GPALPP motifs containing 1. (345 aa)    
Predicted Functional Partners:
arl6ip4
ADP-ribosylation factor-like 6 interacting protein 4.
    
   0.804
wdr6
WD repeat domain 6.
      
 0.702
tbl2
Transducin (beta)-like 2.
      
 0.694
nop2
SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
  
 0.628
maml1
Mastermind-like transcriptional coactivator 1.
   
    0.602
naa50
N(alpha)-acetyltransferase 50, NatE catalytic subunit.
      
 0.597
tmco1
Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling.
      
 0.595
LOC101161577
Phosphatidylserine synthase 1a.
      
 0.586
PTDSS1
Phosphatidylserine synthase 1.
      
 0.586
snapc2
Uncharacterized protein.
      
 0.498
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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