Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ociad1OCIA domain-containing protein. (237 aa)    
Predicted Functional Partners:
timmdc1
Translocase of inner mitochondrial membrane domain containing 1.
   
 
 0.938
phb2
Prohibitin.
   
 
 0.806
med28
Mediator complex subunit 28.
      
 0.729
phb
Prohibitin.
   
   0.716
dcun1d4
DCN1-like protein.
      
 0.639
LOC101173816
Eukaryotic translation initiation factor 1A X-linked b; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.
    
   0.610
slain2
SLAIN motif family, member 2.
      
 0.592
Akap1
KH domain-containing protein.
      
 0.582
mipep
Mitochondrial intermediate peptidase.
      
 0.563
pa2g4
Proliferation-associated 2G4, a.
      
 0.563
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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