STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
megf6Multiple EGF-like-domains 6b. (1602 aa)    
Predicted Functional Partners:
ubox5
U-box domain containing 5.
      
 0.584
mcf2
MCF.2 cell line derived transforming sequence a.
    
 0.551
ENSORLP00000032656
Uncharacterized protein.
   
 0.472
LOC101160196
Ephrin-B3a; Belongs to the ephrin family.
      
 0.469
ctnnal1
Catenin (cadherin-associated protein), alpha-like 1.
    
 0.444
wrap73
WD repeat containing, antisense to TP73.
 
  
 
 0.441
efnb1
Ephrin-B1; Belongs to the ephrin family.
      
 0.424
LOC101175148
Aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase).
    
 0.416
creg1
Cellular repressor of E1A-stimulated genes 1; Belongs to the CREG family.
      
 0.410
LOC101156267
Calpain 12; Belongs to the peptidase C2 family.
    
 
 0.410
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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