Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
megf6Multiple EGF-like-domains 6b. (1602 aa)    
Predicted Functional Partners:
mcf2
MCF.2 cell line derived transforming sequence a.
    
 0.745
ubox5
U-box domain containing 5.
      
 0.644
mst1r
Macrophage stimulating 1 receptor b.
    
 0.610
hmgxb4
HMG box domain containing 4a.
      
 0.601
LOC101175216
Uncharacterized protein.
      
 0.601
wrap73
WD repeat containing, antisense to TP73.
    
 
 0.588
LOC101155634
Si:ch211-113g11.6; Belongs to the semaphorin family.
     
 0.544
ltn1
RING-type domain-containing protein.
      
 0.532
LOC101175148
Aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase).
    
 0.518
H2M3F5_ORYLA
BTB domain-containing protein.
    
 0.499
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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