STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101175595Ribosomal protein L37. (149 aa)    
Predicted Functional Partners:
ndufaf5
NADH:ubiquinone oxidoreductase complex assembly factor 5.
     
 0.842
ND2
NADH-ubiquinone oxidoreductase chain 2; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
     
 0.781
COX14
Cytochrome c oxidase assembly factor COX14.
   
 0.779
LOC101163528
Cytochrome C oxidase assembly factor 3a.
    
 0.775
ecsit
ECSIT signalling integrator.
    
 0.758
LOC101168000
Cytochrome C oxidase assembly factor 5.
     
 0.735
LOC101163261
SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family.
    
 0.724
cmc1
COX assembly mitochondrial protein.
    
 0.715
acadvl
Acyl-CoA dehydrogenase very long chain.
    
 0.691
acad9
Acyl-CoA dehydrogenase family, member 9.
    
 0.691
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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