Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
obi1ORC ubiquitin ligase 1. (654 aa)    
Predicted Functional Partners:
cnot11
CCR4-NOT transcription complex, subunit 11.
    
 
 0.946
cnot10
CCR4-NOT transcription complex, subunit 10.
    
 
 0.924
wrap73
WD repeat containing, antisense to TP73.
    
   0.879
LOC101158138
Ring finger and CCCH-type domains 1b.
    
 
 0.807
cnot1
CCR4-NOT transcription complex, subunit 1.
    
 
 0.792
ENSORLP00000040513
TFIIS central domain-containing protein.
    
   0.765
orc3
Origin recognition complex, subunit 3.
   
 
 0.742
cnot3
CCR4-NOT transcription complex, subunit 3a.
    
   0.703
LOC101168303
CCR4-NOT transcription complex, subunit 3b.
    
   0.703
orc5
Origin recognition complex, subunit 5.
    
 
 0.701
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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