STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nr0b2Nuclear receptor subfamily 0, group B, member 2a. (280 aa)    
Predicted Functional Partners:
nr1h4
Nuclear receptor subfamily 1, group H, member 4.
   
 0.938
nr5a1
FTZ-F1.
   
 0.852
nr5a2
Uncharacterized protein.
   
 0.852
cramp1
Cramped chromatin regulator homolog 1.
    
 
 0.848
LOC101162560
Hepatocyte nuclear factor 4, gamma.
   
 0.827
hnf4a
Hepatocyte nuclear factor 4, alpha.
   
 0.821
nr1h3
Nuclear receptor subfamily 1, group H, member 3.
   
 0.816
mdm2
MDM2 proto-oncogene.
   
 0.795
sirt1
Deacetylase sirtuin-type domain-containing protein.
    
 0.771
LOC101160349
Cholesterol 7-alpha-monooxygenase; Belongs to the cytochrome P450 family.
    
 0.770
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.