STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101173326Glutamate receptor, ionotropic, kainate 1a. (856 aa)    
Predicted Functional Partners:
LOC101162943
LIM domain kinase 1b.
   
 
 0.697
LOC101156600
Uncharacterized protein.
      
 0.678
baz1b
Bromodomain adjacent to zinc finger domain, 1B.
      
 0.678
nipa1
NIPA magnesium transporter 1.
      
 0.678
nipa2
NIPA magnesium transporter 2.
      
 0.678
LOC101169438
Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family.
      
 0.678
tubgcp5
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
      
 0.678
robo1
Roundabout, axon guidance receptor, homolog 1 (Drosophila).
      
 0.678
LOC101155942
Uncharacterized protein.
  
 
0.624
grik4
Glutamate receptor, ionotropic, kainate 4.
  
 
0.623
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.