STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc3a1Solute carrier family 3 member 1. (684 aa)    
Predicted Functional Partners:
slc7a9
Solute carrier family 7 member 9.
   
 0.965
LOC101165530
Uncharacterized protein.
   
 0.959
gbe1
Glucan (1,4-alpha-), branching enzyme 1b.
  
 
 0.755
slc7a7
Solute carrier family 7 member 7.
   
 0.701
LOC101165841
Uncharacterized protein.
   
 0.698
LOC101167380
Si:dkeyp-120h9.1.
   
 0.698
LOC101174987
Solute carrier family 7 member 6.
   
 0.698
prepl
Prolyl endopeptidase like.
  
  
 0.676
pgghg
Protein-glucosylgalactosylhydroxylysine glucosidase.
  
 
 0.674
yipf6
Protein YIPF.
  
 
 0.667
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.