STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppm1bProtein phosphatase, Mg2+/Mn2+ dependent, 1Ba. (402 aa)    
Predicted Functional Partners:
map3k7
Mitogen-activated protein kinase kinase kinase 7.
  
 0.916
LOC101156612
Protein phosphatase, Mg2+/Mn2+ dependent, 1Bb.
  
  
 
0.901
LOC101165917
Rapunzel 5.
      
 0.563
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 
 0.527
arih1
RBR-type E3 ubiquitin transferase.
   
 
 0.522
prkaa2
Non-specific serine/threonine protein kinase.
   
 0.505
prkaa1
Non-specific serine/threonine protein kinase.
   
 0.505
ubc
Ubiquitin B.
   
 0.490
slc3a1
Solute carrier family 3 member 1.
 
 
  
 0.484
tbk1
TANK-binding kinase 1.
  
 0.473
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.