Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101157322Uncharacterized protein. (335 aa)    
Predicted Functional Partners:
Hfm1
Helicase for meiosis 1.
 
      0.885
tmem165
GDT1 family protein.
   
  
 0.582
LOC101173945
Melanopsin.
      
 0.519
mfsd10
Major facilitator superfamily domain containing 10.
      
 0.487
SLC35D3
Solute carrier family 35 member D3.
   
  
 0.474
pno1
RNA-binding protein PNO1; Positively regulates dimethylation of two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 18S rRNA. Belongs to the PNO1 family.
   
  
 0.472
slc35b4
Solute carrier family 35 member B4.
      
 0.464
znf367
Zinc finger protein 367.
      
 0.464
ENSORLP00000032056
Serine palmitoyltransferase, small subunit A.
      
 0.464
ptpra
Receptor-type tyrosine-protein phosphatase alpha.
      
 0.464
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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