Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101155797Family with sequence similarity 78 member Ba. (289 aa)    
Predicted Functional Partners:
wdr43
WD repeat domain 43.
   
 0.608
utp4
UTP4 small subunit processome component.
   
 0.567
wdr75
WD repeat domain 75.
   
  0.530
ankle2
Ankyrin repeat and LEM domain containing 2.
   
  0.482
utp20
UTP20 small subunit processome component.
   
 
 0.472
LOC101165088
Uncharacterized protein.
   
 0.466
LOC101166255
Uncharacterized protein.
   
 0.466
ENSORLP00000035585
Neurexin 2b.
   
 0.466
utp15
UTP15 small subunit processome component.
   
 0.462
LOC101156134
Neurexin 3b.
    
 0.460
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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