Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cep85Centrosomal protein 85. (772 aa)    
Predicted Functional Partners:
sox5
HMG box domain-containing protein.
    
   0.946
sox13
SRY-box transcription factor 13.
    
   0.901
H2LDV5_ORYLA
Uncharacterized protein.
    
 
 0.896
rttn
Rotatin.
      
 0.863
ccdc77
Coiled-coil domain containing 77.
   
  
 0.734
LOC101173940
Nuclear envelope integral membrane protein 1.
      
 0.733
haus1
HAUS augmin-like complex, subunit 1.
      
 0.718
znf367
Zinc finger protein 367.
      
 0.708
plk4
Polo-like kinase 4 (Drosophila).
    
 
 0.708
fbxo5
F-box protein 5.
      
 0.611
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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