STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168538Elastase 2; Belongs to the peptidase S1 family. (266 aa)    
Predicted Functional Partners:
LOC101163721
Carboxypeptidase A1.
   
 
 0.721
CPA1
Carboxypeptidase A1.
   
 
 0.721
LOC101163457
Ependymin related 1.
      
 0.693
JDP2
Jun dimerization protein 2.
      
 0.693
LOC101159188
Carboxypeptidase A4.
   
 
 0.678
rasa1
RAS p21 protein activator (GTPase activating protein) 1a.
   
  
 0.615
zbtb41
Zinc finger and BTB domain containing 41.
    
 
 0.614
LOC101175580
Betaine-homocysteine methyltransferase; Involved in the regulation of homocysteine metabolism.
      
 0.612
LOC101173293
Kininogen 1.
   
 0.594
lasp1
LIM and SH3 protein 1.
      
 0.587
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.