Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
smim15Small integral membrane protein 15. (74 aa)    
Predicted Functional Partners:
lrrc42
Leucine rich repeat containing 42.
      
 0.749
exd2
Exonuclease 3'-5' domain containing 2.
      
 0.747
tceanc2
TFIIS N-terminal domain-containing protein.
      
 0.745
dcaf5
Ddb1 and cul4 associated factor 5.
      
 0.724
ric8b
RIC8 guanine nucleotide exchange factor B.
      
 0.702
hspb11
Zgc:158640.
      
 0.693
srek1ip1
CCHC-type domain-containing protein.
      
 0.688
ndufaf2
NADH:ubiquinone oxidoreductase complex assembly factor 2.
      
 0.613
LOC101171768
BHLH domain-containing protein.
      
 0.603
tmem59
Transmembrane protein 59.
      
 0.601
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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