Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nkpd1NTPase, KAP family P-loop domain containing 1. (686 aa)    
Predicted Functional Partners:
LOC101164049
Uncharacterized protein.
   
 
 0.707
LOC101159134
Xenotropic and polytropic retrovirus receptor 1b.
   
 
 0.707
crk
CRK proto-oncogene, adaptor protein.
    
 0.642
crkl
V-crk avian sarcoma virus CT10 oncogene homolog-like.
    
 0.642
LOC110016423
Uncharacterized protein.
    
 0.642
LOC101156506
Uncharacterized protein.
    
 
 0.542
SNX27
Sorting nexin 27.
    
 
 0.542
fkbp15
Peptidylprolyl isomerase.
   
 0.509
LOC101155643
Rho family GTPase 2.
    
  0.502
LOC101158526
Rho family GTPase 2.
    
  0.502
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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