STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ercc8Excision repair cross-complementation group 8. (401 aa)    
Predicted Functional Partners:
ddb1
Damage-specific DNA binding protein 1.
    
 0.997
ercc6
Excision repair cross-complementation group 6.
    
 0.993
ddb2
Damage-specific DNA binding protein 2.
    
 0.976
LOC101154851
Cullin 4A; Belongs to the cullin family.
    
 0.971
uvssa
UV-stimulated scaffold protein A.
    
 
 0.968
cop1
COP1 E3 ubiquitin ligase.
    
  0.960
H2MG95_ORYLA
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.949
polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.944
cul4b
Cullin 4B; Belongs to the cullin family.
    
 0.913
polr2g
Polymerase (RNA) II (DNA directed) polypeptide G-like.
    
 0.903
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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