STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dlx5Distal-less homeobox 5a. (296 aa)    
Predicted Functional Partners:
dlx6
Distal-less homeobox 6a.
  
 
0.843
bmp4
Bone morphogenetic protein 4.
     
 0.637
runx2
Runt-related transcription factor.
     
 0.631
myf6
Myogenic factor 6.
   
  
 0.582
LOC101172514
Homeobox domain-containing protein.
   
0.554
bmp2
TGF_BETA_2 domain-containing protein.
     
 0.551
edn1
Endothelin 1.
      
 0.532
hand2
Heart and neural crest derivatives expressed 2.
      
 0.496
LOC101160370
Runt-related transcription factor.
     
 0.477
LOC101173202
RUNX family transcription factor 1.
     
 0.477
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.