Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101155756LIM domain-containing protein. (335 aa)    
Predicted Functional Partners:
rsu1
Ras suppressor protein 1.
   
 0.959
ILK
Integrin linked kinase.
   
 0.928
LOC101172012
Uncharacterized protein.
   
 0.928
parvb
Parvin, beta.
   
 0.906
LOC101161694
Parvin, alpha a.
   
 0.906
parvg
Parvin, gamma.
   
 0.856
fermt2
Fermitin family member 2.
   
 
 0.740
fermt1
Fermitin family member 1.
   
 
 0.740
ripk4
Receptor-interacting serine-threonine kinase 4.
    
 0.577
ENSORLP00000027633
annotation not available
   
 0.577
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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