STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162697Serine and arginine rich splicing factor 1a. (245 aa)    
Predicted Functional Partners:
nxf1
Zgc:153681.
   
 0.963
LOC101155211
Serine and arginine rich splicing factor 7a.
   
0.960
srsf10
Serine and arginine rich splicing factor 10.
   
 0.957
LOC101171240
SRSF protein kinase 1b.
    
 0.943
eif4a3
Eukaryotic translation initiation factor 4A3.
  
 0.939
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.934
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.912
LOC101167611
Mago homolog, exon junction complex subunit.
   
 0.902
H2N0H8_ORYLA
RRM domain-containing protein.
   
0.896
SRSF3
Serine and arginine rich splicing factor 3b.
   
0.896
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.