Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LIMD1LIM domains containing 1. (544 aa)    
Predicted Functional Partners:
LOC101156607
Nitric oxide synthase 1 (neuronal) adaptor protein b.
    
 
 0.736
LOC101157471
Si:dkey-34e4.1.
    
 
 0.736
LOC101163480
PID domain-containing protein.
    
 
 0.736
lats1
Large tumor suppressor kinase 1.
    
 
 0.723
lats2
Large tumor suppressor kinase 2.
    
 
 0.723
sav1
Salvador family WW domain containing protein 1.
   
 
 0.705
haus3
HAUS augmin-like complex, subunit 3.
   
 0.656
haus8
Uncharacterized protein.
    
 0.649
rps27a
Ribosomal protein S27a.
     
  0.643
eloc
Elongin C paralog b; Belongs to the SKP1 family.
     
 0.624
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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