STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lfngBeta-1,3-N-acetylglucosaminyltransferase. (370 aa)    
Predicted Functional Partners:
notch1
Notch receptor 1b.
    
 0.968
LOC101171596
Notch receptor 1a.
    
 0.959
LOC101162450
Notch receptor 3.
    
 0.938
H2LGV0_ORYLA
ANK_REP_REGION domain-containing protein.
    
  0.915
chpf
Hexosyltransferase.
      
 0.766
b3gnt9
Hexosyltransferase.
    
 
 0.725
H2LS12_ORYLA
Hexosyltransferase.
    
 
 0.711
nelfb
Negative elongation factor complex member B.
   
 0.643
LOC101162198
LIM domain only 1.
    
 
 0.638
lmo3
LIM domain only 3.
    
 
 0.638
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.