STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
celf5Cugbp, Elav-like family member 5a. (519 aa)    
Predicted Functional Partners:
LOC101159914
Si:ch211-13k12.2.
      
 0.709
LOC101155504
Uncharacterized protein.
      
 0.709
pias4
Protein inhibitor of activated STAT, 4a.
      
 0.666
LOC101166672
Uncharacterized protein.
      
 0.624
rgl1
Ral guanine nucleotide dissociation stimulator-like 1.
      
 0.624
LOC100820722
Transcription factor 3b.
      
 0.615
ell
Elongation factor RNA polymerase II.
      
 0.603
RXFP3
Relaxin family peptide receptor 3.
      
 0.563
ell2
Elongation factor, RNA polymerase II, 2.
      
 0.561
tubg1
Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.
    
   0.520
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.