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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLITRK1SLIT and NTRK like family member 1. (693 aa)    
Predicted Functional Partners:
ptprf
Protein tyrosine phosphatase receptor type Fa.
    
 0.697
PTPRD
Protein tyrosine phosphatase receptor type D.
    
 0.697
LOC101168742
Protein tyrosine phosphatase receptor type Fb.
    
 0.697
LOC101169564
Protein tyrosine phosphatase receptor type Sa.
    
 0.697
PTPRD-2
Uncharacterized protein.
    
 0.697
LOC101174175
Protein tyrosine phosphatase receptor type Sa.
    
 0.697
LOC101172768
Si:ch1073-186i23.1; Belongs to the G-protein coupled receptor 2 family.
    
 
 0.600
adgrl2
Adhesion G protein-coupled receptor L2a; Belongs to the G-protein coupled receptor 2 family.
    
 
 0.600
LOC101166443
Adhesion G protein-coupled receptor L3.1; Belongs to the G-protein coupled receptor 2 family.
    
 
 0.600
adgrl1
Adhesion G protein-coupled receptor L1a; Belongs to the G-protein coupled receptor 2 family.
    
 
 0.600
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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