Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrpprcLeucine-rich pentatricopeptide repeat containing. (1438 aa)    
Predicted Functional Partners:
slirp
SRA stem-loop interacting RNA binding protein.
   
 0.996
LOC101168821
Translational activator of mitochondrially encoded cytochrome c oxidase I.
    
 
 0.933
ptcd3
Pentatricopeptide repeat domain 3.
   
 
 0.924
chchd1
Coiled-coil-helix-coiled-coil-helix domain containing 1.
    
 
 0.897
vdac1
Voltage-dependent anion channel 1.
   
 
 0.878
ndufa10
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
      
 0.852
mrpl58
Mitochondrial ribosomal protein L58.
    
 
 0.823
mrps31
Mitochondrial ribosomal protein S31.
    
 
 0.806
mrpl45
Mitochondrial ribosomal protein L45.
    
 
 0.804
mrpl48
Mitochondrial ribosomal protein L48.
    
 
 0.776
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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