Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kcmf1Potassium channel modulatory factor 1. (340 aa)    
Predicted Functional Partners:
ubr4
Ubiquitin protein ligase E3 component n-recognin 4.
    
 
 0.931
ENSORLP00000034314
Ankyrin repeat domain 9.
    
 
 0.798
abhd10
Transgelin 3b.
    
   0.770
sars2
Seryl-tRNA synthetase 2, mitochondrial.
    
   0.716
LOC101171648
Nipsnap homolog 3A (C. elegans).
    
   0.715
LOC101158778
COMM domain containing 5.
      
 0.707
LOC101161900
SH3 domain containing ring finger 2.
      
 0.698
UHRF2
Ubiquitin like with PHD and ring finger domains 2.
      
 0.654
ube2r2
Ubiquitin-conjugating enzyme E2R 2; Belongs to the ubiquitin-conjugating enzyme family.
   
 
 0.510
ube2a
Ubiquitin-conjugating enzyme E2A (RAD6 homolog); Belongs to the ubiquitin-conjugating enzyme family.
   
 
 0.488
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.