Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
slitrk5SLIT and NTRK-like family, member 5a. (875 aa)    
Predicted Functional Partners:
LOC101169564
Protein tyrosine phosphatase receptor type Sa.
    
 0.943
LOC101174175
Protein tyrosine phosphatase receptor type Sa.
    
 0.943
grm2
Glutamate receptor, metabotropic 2a.
   
 
 0.629
unc5b
Unc-5 netrin receptor B.
    
 0.609
LOC101156534
Synaptotagmin Vb.
   
  
 0.604
lamtor1
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.
    
  0.571
Vamp3
Vesicle-associated membrane protein 3 (cellubrevin).
     
  0.570
LOC101169249
Non-specific serine/threonine protein kinase.
    
  0.532
pak2
Non-specific serine/threonine protein kinase.
    
  0.532
kiaa0355
Si:ch211-79l17.1.
     
  0.523
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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