Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mrpl13Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family. (179 aa)    
Predicted Functional Partners:
mrpl15
Mitochondrial ribosomal protein L15.
  
 0.997
mrpl3
Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
 
 0.995
mrps14
Mitochondrial ribosomal protein S14.
  
 0.994
mrpl9
Mitochondrial ribosomal protein L9.
   
 
 0.994
mrpl11
Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.
  
 0.993
fau
40S ribosomal protein S30.
   
 0.992
mrpl16
Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.
  
 0.992
mrpl2
Mitochondrial ribosomal protein L2.
  
 0.991
mrpl41
Uncharacterized protein.
   
 
 0.991
mrpl4
Mitochondrial ribosomal protein L4.
  
 0.990
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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